TextbookClinical SciencesImmunology Basics

Immunology Basics

The immune system provides defence against infection and malignancy through innate and adaptive mechanisms. Understanding immunology underpins management of infection, autoimmunity, and immunodeficiency.

Key Facts

The innate immune system provides immediate, non-specific defence — includes physical barriers, complement, neutrophils, macrophages, NK cells The adaptive immune system is antigen-specific and generates memory — involves T cells (cell-mediated) and B cells (humoral) MHC Class I presents intracellular antigens to CD8+ cytotoxic T cells (present on all nucleated cells) MHC Class II presents extracellular antigens to CD4+ helper T cells (present on APCs: macrophages, dendritic cells, B cells) Complement activation occurs via classical (antibody-mediated), alternative (spontaneous), and lectin (MBL) pathways, all converging on C3 convertase Immunoglobulins: IgG (most abundant, crosses placenta), IgA (mucosal immunity), IgM (primary response), IgE (allergy/parasites), IgD (B cell activation) Th1 cells drive cell-mediated immunity (IL-2, IFN-γ); Th2 cells drive humoral immunity (IL-4, IL-5, IL-13) Regulatory T cells (Tregs) prevent autoimmunity — express CD4, CD25, and FoxP3

Overview

Key Facts

The immune system is divided into innate (non-specific, rapid) and adaptive (specific, slower but with memory) components. Both systems work in concert to protect against pathogens.

Epidemiology

Immune system dysfunction manifests as:

  • Immunodeficiency: Increased susceptibility to infection (primary: ~1 in 1200 live births; secondary: much more common — HIV, iatrogenic)
  • Autoimmunity: Affects ~5-8% of the UK population
  • Hypersensitivity: Allergic disease affects ~30% of the UK population at some point
  • Malignancy: Immune surveillance failure

Aetiology

Innate immunity components:

  • Physical barriers (skin, mucous membranes)
  • Chemical barriers (lysozyme, defensins, gastric acid)
  • Cellular (neutrophils, macrophages, NK cells, mast cells, dendritic cells)
  • Humoral (complement, acute phase proteins, interferons)

Adaptive immunity components:

  • B lymphocytes → plasma cells → immunoglobulins
  • T lymphocytes → CD4+ helper, CD8+ cytotoxic, regulatory T cells
  • Antigen-presenting cells bridge innate and adaptive immunity

Pathophysiology

Immune responses are initiated by pattern recognition receptors (PRRs) including Toll-like receptors (TLRs) on innate cells, which recognise pathogen-associated molecular patterns (PAMPs). This activates inflammatory cascades and primes the adaptive immune response through antigen presentation via MHC molecules.

Clinical Presentation

Immunodeficiency

  • Recurrent, severe, or unusual infections
  • Infections with opportunistic organisms
  • Poor response to standard antimicrobial therapy
  • Failure to thrive (children)

Autoimmune Disease

  • Organ-specific: Type 1 diabetes, Hashimoto's, Graves', pernicious anaemia
  • Systemic: SLE, rheumatoid arthritis, systemic sclerosis

Hypersensitivity

  • Type I (immediate): Anaphylaxis, asthma, hay fever
  • Type II (cytotoxic): Autoimmune haemolytic anaemia, Goodpasture's
  • Type III (immune complex): SLE, post-streptococcal GN
  • Type IV (delayed): Contact dermatitis, TB skin test

Red Flags

  • Recurrent serious infections (≥2 pneumonias/year, ≥2 systemic infections)
  • Unusual organisms (Pneumocystis, atypical mycobacteria)
  • Family history of immunodeficiency
  • Failure to thrive with recurrent infections in children

Differential Diagnosis

DiagnosisKey FeaturesInvestigation
Primary immunodeficiencyRecurrent infections from early lifeImmunoglobulins, lymphocyte subsets, complement
Secondary immunodeficiencyHIV, medications, malnutritionHIV test, drug history, albumin
Autoimmune diseaseOrgan-specific or systemic inflammationAutoantibodies, CRP, ESR
Allergy/atopyIgE-mediated reactions, eosinophiliaSpecific IgE, skin prick tests
MalignancyLymphadenopathy, cytopenias, weight lossCT, biopsy, flow cytometry
Chronic infectionPersistent infection despite treatmentCultures, HIV, TB screening

Diagnosis / Investigation

Bedside

  • Clinical assessment: Lymphadenopathy, hepatosplenomegaly, skin changes, tonsil size

Bloods

  • FBC with differential: Lymphopenia, neutropenia, eosinophilia
  • Immunoglobulins (IgG, IgA, IgM, IgE): Quantitative levels
  • Lymphocyte subsets: CD4/CD8 count (flow cytometry)
  • Complement levels: C3, C4, CH50/CH100, AP50
  • Autoantibodies: ANA, anti-dsDNA, ANCA, anti-CCP, RF
  • CRP and ESR: Inflammatory markers

Imaging

  • CXR: Thymic shadow (absent in DiGeorge), bronchiectasis
  • CT chest: Bronchiectasis, lymphadenopathy, thymoma

Special Tests

  • Vaccine responses: Pneumococcal antibody levels pre/post-vaccination
  • Nitroblue tetrazolium (NBT) test / DHR flow cytometry: Chronic granulomatous disease
  • Lymphocyte proliferation assays: T cell function
  • HIV test: Secondary immunodeficiency screening
  • Genetic testing: For primary immunodeficiency syndromes

Management

Non-pharmacological

  • Infection avoidance measures
  • Patient education regarding signs of infection
  • Medic-Alert bracelet for severe immunodeficiency
  • Avoid live vaccines in immunocompromised patients

Pharmacological

  • Immunoglobulin replacement: IV (0.4-0.6g/kg every 3-4 weeks) or subcutaneous for antibody deficiency
  • Prophylactic antibiotics: Co-trimoxazole for Pneumocystis prophylaxis in severe T cell deficiency
  • G-CSF: For severe congenital neutropenia
  • Immunosuppression for autoimmunity: Corticosteroids, azathioprine, mycophenolate, rituximab, biologics
  • Antihistamines/adrenaline: For allergic conditions

Surgical/Interventional

  • Haematopoietic stem cell transplant: For severe primary immunodeficiency (SCID, CGD)
  • Gene therapy: Emerging for specific conditions (ADA-SCID)

Referral Criteria

  • Suspected primary immunodeficiency → clinical immunology
  • Recurrent serious infections → infection and immunity specialist
  • Suspected autoimmune disease → rheumatology or relevant organ specialist

Prognosis

  • SCID: Fatal within first year if untreated; >90% survival with early HSCT
  • Common variable immunodeficiency: Normal life expectancy with immunoglobulin replacement; increased risk of autoimmunity and lymphoma
  • XLA: Good prognosis with immunoglobulin replacement
  • DiGeorge syndrome: Variable — depends on severity of thymic aplasia and cardiac defects
  • Autoimmune conditions: Most are chronic and require lifelong management

Other Relevant Information

Immunoglobulin Summary

Ig ClassKey FeaturesClinical Relevance
IgGMost abundant (75%), crosses placenta, 4 subclassesPassive neonatal immunity, secondary response
IgAMucosal immunity (secretory form), dimerIgA deficiency — most common primary immunodeficiency (1:500)
IgMFirst response, pentamer, complement fixationPrimary response marker
IgEMast cell/basophil binding, allergy, parasitesAllergic disease, parasitic infection
IgDB cell maturation markerMinimal clinical significance

Complement Deficiencies

DeficiencyClinical Association
C1q, C2, C4SLE-like disease
C3Recurrent bacterial infections
C5-C9 (MAC)Recurrent Neisseria infections
C1 esterase inhibitorHereditary angioedema